GeneCountCraft is a simple, no-coding application that converts FASTQ reads to gene counts using Salmon alignment on your personal computer. Just build your reference index once, then select your FASTQ files and click Run. No command line. No scripting. No complex setup. Fast, accurate, and designed to make RNA-seq processing effortless.
Important: Windows users must install WSL with Ubuntu before running GeneCountCraft.
View the tutorial